The molecular evolution inference software

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				### Prototype version (Rev. 0.71) ###
					July 31, 1996

				Copyright (C) 1996 Satoshi OOta

()Ϥˡˤ뼫ʳؤˤǡϤΰյ

ϰǽΡȡפȤƴԤ졢˴ط͡ʸ
椬ʤƤޤߤ⤽θ³Ƥޤʤ顢
Ǯ٤ȡؤβʴԤϾäûŦ
褦ˤʤäƤޤ

̣ߤλޤȤޤ桹ϴŪ
ˤʤɬפϤޤ󡣥ǥäƤФ͡
٤褦䤯ŤʤΤˤʤĤĤ뤳Ȥ̣ƤȻϻפ
Ǥϡܼ򤷤͡ˤäơ
ƻ˸椵Ƥ椯ȤǤ礦ΤȤϤष֤٤ȤȻפ
ޤ

衢¿̤ΥǡϡȤư黻¿̤˴ޤ褦ʿͷ׻
줬Ȥ줿ϤޤꤢޤǤ⤽줿
ϡ絬Ϥʷ׻񸻤ѰդƽƤޤȤ˵ǽ롢
ˤϤǤ뤳Ȥ¿äΤǤΤȤʤ®ʽ
٤Ƥ褦絬ϥǡϤΤ褦ʻŻǤϡν
ϤΡֽŤפ礭­ȤȤʤ뤳Ȥͽۤޤäơԡ
ɻο͡Ȥä絬ϤʥǡϤͤ뤳ȤϤޤ
Ǥä櫓Ǥ

Τȡ­ȡפ¸ߤϸߤǤܼŪˤѤäƤޤ˥ݡ
֥ʽklicǤƱν¾μ³ǵҤ
Ӥȡ׵ᤵ׻񸻤礭Ψɬ⤯


ʤ顢ϲ桹¤줿׻񸻤ʤäǤ
ߡϡɥβʤϤɤɤ󲼤ꡢ桹˾¿Υϡɥ
ˤ뤳ȤǤޤ֥ϡɥϤפλ夬⤦ޤ
ƤΤǤΤ褦ʾǤϡ¿η׻礷ʬ
褦Ȥͤ˽ФƤޤʤȡ٤ϤΤ
ʬĶǽ륽եȥ񤯻ŻˤʤäƤޤ
Ϸ褷ƴñʤȤǤϤޤ󡣰̤ˤΤ褦ʬĶư
륽եȥʣǡְ㤤ޤߤ䤹Ǥ

ܼŪˤΤ褦ưޤץεҤ˸Ƥ
ȹͤޤȤΤϡ³Ūʳǰޤޤʤˡä
ƱռʤǺѤफǤ^*ʪŪ
¹ԲǽڤΥƹͤΤ礭ħǤä
ǵҤ줿ץϡ͡η֤򡢥르ꥺѤ
뤳Ȥʤ뤳ȤǤΤǤ

ư³Ū˲᤹ȡƱʤ
ư¾ʤʤȤ狼ޤ(˼³ŪʲϺ
櫓Ǥ)

ɤʹ®ʷ׻⡢ִ֤켰ˤʤ뤳Ȥ˺ƤϤޤ
󡣤ǥ塼ʥåפ줿®׻ѤΥץ񤤤Ƥ⡢
η׻ְȤΤȤʤСΥץμ̿⤽ǿ
Ƥޤޤषϡϡɥ˰¸ξʤ
ݲ줿եȥ񤯤٤ǤХեȥʪΰ
ҤΤ褦ˡϡɥǤǤ⡢鼡إϡɥ
Ӥ뤳ȤǤޤ(餯ʲʤ顪)ϡ
Τ褦ŪˤäƤĤθȸޤ

ʳؤθˤơɤΤ褦ʾ׵ᤵ뤫ϼʳؼԼ
Ȥˤ狼äƤʤȤ¿ΤǤäơϼμǡ
ԺФơǡϤ䥷ߥ졼ΤΥɤ񤯤Ȥ¿
ΤǤζ̣ǤäơΤΥƥ˥åǤϤޤ
ʤɤȤʤħϡ¤ϼʳؤθ
ƤäȤͭѤǤȹͤޤ

DeepForestϤΤ褦ʤȤƧޤơΥץꥱ
Ȥϡʲ˶̣Τ뼫ʳؼԤץ񤯾
ˡͭѤʥ⥸塼(ҸΥå)󶡤뤳Ȥ˼֤Ƥޤ

伫ȤΥåȡϡ(ԥ塼ȤȤ)(եȥ
Ȥ)פǤ

ʣ˵ǽ

DeepForestʬҿʲꤹ뤿ΥեȥǤDeepForest
ʬҿʲ뤿ɬפ͡ʥ⥸塼ޤǤޤ
ʤϤΥ⥸塼򤢤ʤȤν񤤤ץफƤӽФ
ȤǡʣʥǡϤԤȤǤޤޤDeepForestklic
ϤȤѤƤ뤿ᡢϤʬǽäƤޤĤޤꡢ
DeepForestϥѡԥ塼ѡʥ륳ԥ塼ޤǤץ
ȥեȤƲŪѤ뤳ȤǤΤǤ

¸ʳؤήǤʪؤˤơҤȤĤ㳰Ūʬޤ
줬ʲؤǤ̿Ĺ֤򤫤ƤäȿʲƤ
ͤΤǡ桹ϼ¸ǿʲȤݤƸ뤳ȤǤޤ
ʲȤǰȴ̿ݤ򰷤ȤԲǽǤʤʤ顢
γǰ̿ݤΤҤȤĤǤꡢ͡ʪ̿ݤŪ
˰θǤ뤫Ǥ

ǤϻãϿʲȤݤɤֲʳŪפ˰ä褤ΤǤ礦
ȤФʤ¸ǽФǡ˿ʲŪ¦̤ͻä硢
ʤϤΥǡɤ褤ΤǤ礦äȤŪ
ˡϡ긵ˤǡȻȲǽʥǡ顢ľܤϴѻ뤳ȤΤǤ
ʤʲȤݤŪפ˿ꤹ뤳ȤǤ礦Τ褦ʹͤ
ȤȯŸƤ䤬ʬҿʲؤǤDeepForestϤʬҿʲ
ؤݤ줿͡ʥǡϤμˡǡä˽פǤȹͤ
οˡ⥸塼ȤǤƥ桼󶡤ޤޤñ
ʤǡϤˤȤɤޤ餺ʲŪݤΥߥ졼ԤΥ
塼ޤǤޤ

DeepForestϼºݤʬҿʲθǻѤ줿ץ饤֥
ȤƤޤȤ᤿ΤǤꡢΨʥǡ򰷤˽ǤƤޤ

DeepForestʿ7ǯ8ǯǯײΰˤ곫ȯޤ
ΰ̣ͤơDeepForestΥץȥǤ뤳Ȥ
ʤޤץȥǤϤĤΥ⥸塼礷ƺä
ץǡgo/0ȲΤƤޤ̾̿θ
(=Origin=(time=0))򸫤Ƥߤ褦Ȥ̣ޤǤޤ

go/0ϼKL1νϤǤklic(ư黻ˤĤ)Ĵ
٤뤿˽񤫤ޤϤޤäٳ뤷ᡢƾ
ǡȤǤޤ󡣤ñʺƵ¤¿ѤƤ뤿
ˡ®٤٤ʤäƤޤꡢ¤ľʥ르ꥺ
ѤƤޤklicΥǥХågo/0ȥ졼򤷤ƤߤСͻ
褯狼Ȼפޤ

()go/0ưĶ

ŪưĶklic 3.001μƤUNIXǤĤޤꡢ⥸塼
klic 3.001ǥѥ뤹ɬפޤޤʬĶ
PVMƤɬפޤ

()go/0Υե빽

֥եŸȡʲΥե뤬Ǥޤ

	advertise.txt	DeepForestξҲ
	DeepForest.doc	
	Document	θȯɽԻ̾ʤ
	Readme		DeepForest˴ؤŪ(ʸ)
	pimos		pimosѥǥ쥯ȥ
	unix		unixѥǥ쥯ȥ

ǥ쥯ȥunixϰʲΥեޤǤޤ

--------------------------------------------------------------------
(bytes)	ե̾			
--------------------------------------------------------------------
 2228		calculate.kl1	ñʿͤɾ뤿Υ⥸
				Ǥ(go/0ǤϻȤäƤޤ)

21391		clike.kl1	դ٤׻뤿Υ⥸塼
				Ǥ
 8410		get_seq.kl1	ߥλǡgo/0Ǥ
				褦Ѵޤ
 2712		get_seq_2.kl1	ߥλǡgo/0Ǥ
				褦Ѵޤ(go/0ǤϻȤäƤޤ)
 2708		go.kl1		go/0ΤΤǤ
 1969		list.kl1	Ȥ߹ߤΥ⥸塼ˤϤʤ褦ʡ
				ꥹȤ򰷤νҸޤ⥸塼
				Ǥ
 1479		max.kl1		礭ͤĿ򤷤ޤ
				(go/0ǤϻȤäƤޤ)
 1457		plot_like.kl1	ٶ̤ץåȤޤ(go/0ǤϻȤ
				Ƥޤ)
 3449		remove_gap_site.kl1
				åפޤॵȤޤ
 4562		remove_gap_site_2.kl1
				åפޤॵȤޤ
				(go/0ǤϻȤäƤޤ)
 1168		string.kl1	Ȥ߹ߤΥ⥸塼ˤϤʤ褦ʡ
				ʸ򰷤νҸޤ⥸塼
				Ǥ
  837		symbol.kl1	ñʿ򤹤뤿Υ⥸塼
				Ǥ(go/0ǤϻȤäƤޤ)
 1570		termio.kl1	Ȥ߹ߤΥ⥸塼ˤϤʤ褦ʡ
				Ϥ򰷤νҸޤ⥸塼
				Ǥ
56823		traverse.kl1	Ĺκ򤹤뤿Υ⥸塼
				Ǥ
11837		tree.kl1	ڹ¤äǡ򰷤Υ⥸
				Ǥ	
--------------------------------------------------------------------

ǥ쥯ȥpimosϰʲΥ⥸塼ޤǤޤ

Υ⥸塼ϡPIM˥Ǥ빥ʿ͡ˤ¹Ԥ뤳
ǤޤPIM/m(64PE)ǤưǧƤޤ˻ǡ
Τߤ򥵥ݡȤƤޤ

--------------------------------------------------------------------
(bytes)	name		
--------------------------------------------------------------------
26726		contour.kl1	ٶ̤ץåȤޤ
59915		traverse.kl1	Ĺκ򤷤ޤ
--------------------------------------------------------------------

------------------------------------------------------------
Satoshi OOta (Neither Ota nor Ohta nor Oota, but OOta!)
------------------------------------------------------------
Department of Genetics,
School of Life Science,
The Graduate University of Advanced Studies
at
Laboratory of Evolutionary Genetics,
National Institute of Genetics,
Mishima, 411 Japan
FAX: +81-559-81-6794
TEL: +81-559-81-6790
------------------------------------------------------------

					Copyright (C) 1996 Satoshi OOta
