 ##########################################################################
 #									  #
 # The molecular evolution inference software				  #
 #									  #
 # #####  ###### ###### #####   ######  ####  #####  ######  ####   ##### #
 # #    # #      #      #    #  #      #    # #    # #      #         #	  #
 # #    # #####  #####  #    #  #####  #    # #    # #####   ####     #	  #
 # #    # #      #      #####   #      #    # #####  #           #    #	  #
 # #    # #      #      #       #      #    # #   #  #      #    #    #	  #
 # #####  ###### ###### #       #       ####  #    # ######  ####     #	  #
 #									  #
 #				### Prototype version (Rev. 0.71) ###	  #
 #						July 6, 1996		  #
 #									  #
 #					Copyright (C) 1996 Satoshi OOta	  #
 #									  #
 ##########################################################################

all:
	klic -o go 		\
		termio.kl1	\
		list.kl1 	\
		tree.kl1 	\
		traverse.kl1 	\
		go.kl1

	klic  -o get_seq	\
		get_seq.kl1

	klic  -o get_seq_2	\
		get_seq_2.kl1	\
		termio.kl1

	klic  -o remove_gap_site	\
		remove_gap_site_2.kl1	\
		list.kl1		\
		termio.kl1

	klic  -o remove_gap_site_2	\
		remove_gap_site_2.kl1	\
		termio.kl1		\
		list.kl1
		 

	klic  -o max			\
		max.kl1		 	\
		termio.kl1		\
		calculate.kl1		

	klic  -o 			\
		plot_like		\
		plot_like.kl1	 	\
		termio.kl1		\
		like.kl1		\
		clike.kl1		\
		tree.kl1		\
		symbol.kl1		\
		list.kl1		\
		calculate.kl1

clean:	
	rm -f			\
	*.c			\
	*.o			\
	*.ext			\
	*.h			\
	*.db			\
	*~			\
	get_seq			\
	get_seq_2		\
	go			\
	go_d			\
	max			\
	plot_like		\
	remove_gap_site		\
	remove_gap_site_2	

simple:
	go simple-sample.pl

sample:
	go sample.pl

	

