| Abstract | .... 2 | |
| 1 | Introduction | .... 2 |
| 2 | Preliminaries | .... 3 |
| 2.1 | Root mean square deviation | .... 3 |
| 2.2 | Substructure search | .... 3 |
| 3 | New hash vectors | .... 4 |
| 3.1 | Conditions for hash vectors | .... 4 |
| 3.2 | Hash vector-a basic one | .... 4 |
| 3.3 | Variants | .... 5 |
| 3.4 | Substructure Search using hash vectors | .... 6 |
| 4 | Experimental results | .... 7 |
| 5 | PROTEIX | .... 8 |
| 5.1 | Overview of the system | .... 8 |
| 5.2 | Pattern matching facilities | .... 9 |
| 5.3 | Graphic interface | .... 10 |
| 6 | Conclusion | .... 11 |
| Acknowledgement | .... 11 | |
| References | .... 11 |
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