| Abstract | .... 3 | |
| 1 | Introduction | .... 3 |
| 2 | Simulated annealing algorithm | .... 3 |
| 3 | Parallel algorithm of SA | .... 4 |
| 3.1 | Simple Parallel SA | .... 4 |
| 3.2 | Temperature Parallel SA | .... 4 |
| 4 | Apllication to multiple alignment | .... 5 |
| 4.1 | Move definition | .... 5 |
| 4.2 | Definition of energy function | .... 6 |
| 5 | Experimental results | .... 6 |
| 6 | Conclusion | .... 7 |
| Acknowledgements | .... 7 | |
| References | .... 7 | |
| End | .... 13 |
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