| Abstract | .... 3 | |
| 1 | Introduction | .... 3 |
| 2 | Multiple Aligement Sysytem MASCOT | .... 4 |
| 3 | Generation of Initial Alignment based on 3-way DP | .... 5 |
| 4 | Refinement of Alignment by Simulated Annealing | .... 6 |
| 5 | Cluster Anlysis | .... 7 |
| 6 | An Example of Application of MASCOT | .... 8 |
| 7 | Discussion | .... 8 |
| 8 | Summary | .... 9 |
| Acknowledgements | .... 9 | |
| References | .... 9 | |
| End | .... 14 |
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